Wow, thats a bummer. When that happens with my big guys I yank em out of the pot, cut off the infected parts, apply the neccessary fungicide and let them dry out in a shady, but dry spot with no media at all for about a week. With a seedling, I think you could do the same, but only for a few days. Otherwise the plant will die without the storage resources that a big guy would have. I might be worried though, that a completely dry media would actually suck out some of the moisture from the new roots as they form, thus killing them. You might want to just let the plant hang out in the air and water it every other day until you get a decent root system going. Or even mount it. That way, its dry and it still has some place to attach to and you dont have to worry about descication or new root breakage in a few weeks. Thats probably what I would do, but maybe someone has a better idea?? Either way, good luck!!
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