Your oncidium looks very good!
I got rid of mine because it got really big, but I love the fragrant flowers on this hybrid.
It is the time to repot now.
See that tiny new growth emerging at the base of the leading pb?
It will grow fast and eventually start developing roots of its own. It is right on the edge of the pot and there is no more space left. so now is the time to move your plant into a bigger pot to give it some room to grow.
You can split the whole thing in two if you'd like, but it's best to just leave them for now as some of the older pbs are smaller. I'm pretty sure even dividing it now won't really affect the flowering next season, but it's always better to wait until the whole thing gets just a little bit bigger.
The dark marking is a disease spot. Simply trim that part ( cut about one inch into the healthy green tissue) off and that will be the end of it.
Leafless pbs are called backbulb, yes. You can just leave it as is. It's part of the whole plant.
The annoying little flying insect in the photo is called fungus gnat.
I have lots of them. They usually come in the potting mix (peat based) of house plants.
Once they are introduced, they tend to explode in numbers.
They are not harmful to the plants, so you don't need to worry. They are just nausance at most.
I find that they are almost gone during the extreme weathers like winter and summer. Spring and fall, they are like all over! lol
One thing I find really helpful in keeping their numbers down is to grow this plant called pinguicola, or simply pings!
It's one of those carnivorous plants that eat on bugs.
Unlike many carnivorous plants though, it does not look that creepy and it even has nice magenta flowers!
I got one about two months ago and it's just amazingly efficient!
Eveyday you see many little black bugs (fungus gnat) stuck on the leaves. Some dead and dry, and some are still moving around in place. Once the bugs land on the leaves, that's the end of them!
I highly recommend pings!
For now, just use your hands to kill any you see.