Black growth in cattleyas is often the result of a fungal disease caused by fungi in the phytophthora or pythium genera. It is most common in cool, humid environments, so it sounds like your climate is "perfect".
You are lucky it hasn't progressed down into the rhizomes, or they'd be toast.
Remove all traces of blackened tissue, and treat with a good systemic fungicide (I vote for Cleary's 3336 WP).
Be VERY careful with watering. letting no splashing between plants occur, and water only early in the day so liquid on plant tissues can evaporate quickly.
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