Can you try reposting your photos as I am not able to get them to enlarge (when I click on them, I get an error that they are not in the database). This would help in being able to see the spots you are referring to and maybe telling if they are something to worry about or not.
I have a couple of these plants that are mounted on tree fern slabs and grow year round outside. They have no other growing media (no sphagnum moss, etc. added to the mounts). At this time of year, they get about 2-3 hours of direct morning sun with bright shade the rest of the day, are watered once a week and are allowed to dry out between waterings. All are currently in bloom with multiple spikes as below -
Some of my p-bulbs have brown or black patches on them but these don't seem to effect the plant at all. I see them most on older bulbs which also wrinkle as they give norishment to the rest of the plant and slowly die off.
I realize that your growing conditions are alot different then mine but I would suspect that you may be watering yours too often, especially since it has finished blooming and is probably not actively growing. Keeping them too wet can lead to roots dying off and the plant declining. Check your roots to see what is happening there. Are they healthy?
You might also consider mounting your plant as I have been told that they do best grown this way.