Most orchid seed sowing companies will offer a replating service for a certain fee per replate. A "replate" is what you're referring to, when the seed from the "mother flask" has reached a certain stage of growth called a "protocorm," and these protocorms need to be thinned out to grow better. The sowing medium can vary from mother flask to replate flask, as there are different chemicals and hormones required by the seed vs. the protocorm. I'd strongly recommend getting the lab you're using to replate the mother flasks for you, as replating is a difficult procedure if you're not familiar with it (and don't have a lab you can use).
Here's a skeleton seed-to-compot situation for you, assuming that the mother flask(s) has(have) been filled with medium, and is(are) ready to accept the seeds, and also assuming you're working in a totally sterile environment (laminar flow hood):
1 - Separate the dry seed from the husks of the seed pod.
2 - Sterilize the seed (using any number of chemicals).
3 - Sow the seed onto the medium in the mother flask(s).
4 - Seal the mother flask(s), and wait.
Now you wait several months for germination and protocorm development. Once the protocorms have formed, here's the next skeleton procedure (again, assuming replate medium is ready in flasks, and working in a sterile environment):
1 - Remove the protocorms from the mother flask(s).
2 - Using a replating spatula (or similar tool), separate the clumps of protocorms into smaller pieces.
3 - Sow the protocorms onto the replate medium, allowing enough room for the protocorms to develop into seedlings.
4 - Close the replate containers, and wait some more.
Once the protocorms develop into seedlings, all that's left to do is remove them from the replate flasks, and plant them in community pots.
That's about as skeleton as I can get, so sorry if it seems like much. I'd be happy to explain anything further, if you'd like. I did my senior AP Biology thesis on sowing orchids from seed, using commonly available ingredients/chemicals. Aaron Hicks - who was running the Orchid Seedbank Project at that time (1999) - was of immense help to me, so I'd definitely recommend reading up on the OSP's website, or even purchasing Aaron's book, if it's still out there somewhere.
Let me know if I can be of any more help.
-Tim
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